If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ), 'gf_id' => 'HOM05D000692', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000692' ), 'data_identifier' => 'HOM05D000692', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000692', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '826', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p15440' => 'bna', 'A01p27560' => 'bna', 'A02p29800' => 'bna', 'A02p38230' => 'bna', 'A03p55060' => 'bna', 'A03p66270' => 'bna', 'A06p06030' => 'bna', 'A06p38220' => 'bna', 'A06p46060' => 'bna', 'A08p24760' => 'bna', 'A08p34680' => 'bna', 'A09p19020' => 'bna', 'A09p22180' => 'bna', 'A09p22190' => 'bna', 'Aa31LG11G8440' => 'aar', 'Aa31LG2G11380' => 'aar', 'Aa31LG6G5640' => 'aar', 'Aa31LG6G7380' => 'aar', 'Aa31LG9G6640' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2547' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3642' => 'aag', 'Actinidia01496' => 'ach', 'Actinidia01674' => 'ach', 'Actinidia01877' => 'ach', 'Actinidia04598' => 'ach', 'Actinidia07637' => 'ach', 'Actinidia16552' => 'ach', 'Actinidia16875' => 'ach', 'Actinidia18475' => 'ach', 'Actinidia27286' => 'ach', 'Ah.06g196200' => 'amhyb', 'Ah.09g233760' => 'amhyb', 'Ah.12g053200' => 'amhyb', 'AL1G19800' => 'aly', 'AL1G43910' => 'aly', 'AL1G66470' => 'aly', 'AL7G29160' => 'aly', 'AL8G12230' => 'aly', 'AL8G23410' => 'aly', 'Aqoxy1G01709' => 'aox', 'Aqoxy1G01710' => 'aox', 'Aqoxy1G02077' => 'aox', 'Aqoxy2G02653' => 'aox', 'Aqoxy4G00372' => 'aox', 'Aqoxy5G04264' => 'aox', 'arahy.Tifrunner.gnm1.ann1.CG85IA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E28A1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4QE4D' => 'arhy', 'AT1G09310' => 'ath', 'AT1G30020' => 'ath', 'AT1G56580' => 'ath', 'AT4G24130' => 'ath', 'AT5G46230' => 'ath', 'AT5G49600' => 'ath', 'ATR0044G031' => 'atr', 'ATR0435G001' => 'atr', 'ATR0602G139' => 'atr', 'ATR0620G112' => 'atr', 'ATR0693G458' => 'atr', 'ATR1088G012' => 'atr', 'Atru.chr10.1236' => 'acertr', 'Atru.chr10.1673' => 'acertr', 'Atru.chr2.241' => 'acertr', 'Atru.chr2.267' => 'acertr', 'Atru.chr2.3892' => 'acertr', 'Atru.chr4.3113' => 'acertr', 'Atru.chr6.2802' => 'acertr', 'Atru.chr9.1885' => 'acertr', 'Atru.chr9.1886' => 'acertr', 'AUR62000423' => 'cqu', 'AUR62006769' => 'cqu', 'AUR62007052' => 'cqu', 'AUR62019916' => 'cqu', 'AUR62030202' => 'cqu', 'AUR62031146' => 'cqu', 'AUR62036557' => 'cqu', 'BcaB03g12189' => 'bca', 'BcaB03g13284' => 'bca', 'BcaB04g20165' => 'bca', 'BcaB07g30847' => 'bca', 'BcaB07g31129' => 'bca', 'BcaB07g32602' => 'bca', 'BcaB07g34131' => 'bca', 'BcaB07g34164' => 'bca', 'BcaC01g00149' => 'bca', 'BcaC02g10720' => 'bca', 'BcaC03g16840' => 'bca', 'BcaC03g17741' => 'bca', 'BcaC04g21716' => 'bca', 'BcaC04g22069' => 'bca', 'BcaC05g24785' => 'bca', 'BcaC06g30718' => 'bca', 'BcaC06g31488' => 'bca', 'BcaC07g38491' => 'bca', 'BcaC07g38493' => 'bca', 'BcaC07g41883' => 'bca', 'BcaC09g50906' => 'bca', 'BcaNung01118' => 'bca', 'BcaNung05954' => 'bca', 'BcaNung05955' => 'bca', 'BcaNung06403' => 'bca', 'BcaNung06404' => 'bca', 'BolC1t01863H' => 'bol', 'BolC2t10763H' => 'bol', 'BolC2t11827H' => 'bol', 'BolC3t19887H' => 'bol', 'BolC4t24092H' => 'bol', 'BolC5t29488H' => 'bol', 'BolC7t43495H' => 'bol', 'BolC7t44534H' => 'bol', 'BolC7t45832H' => 'bol', 'BolC9t55307H' => 'bol', 'BolC9t55709H' => 'bol', 'BraA01t01483Z' => 'bra', 'BraA01t02894Z' => 'bra', 'BraA02t08001Z' => 'bra', 'BraA02t08803Z' => 'bra', 'BraA03t14566Z' => 'bra', 'BraA03t15682Z' => 'bra', 'BraA06t23814Z' => 'bra', 'BraA06t26737Z' => 'bra', 'BraA06t27471Z' => 'bra', 'BraA08t34430Z' => 'bra', 'BraA08t35376Z' => 'bra', 'BraA08t35380Z' => 'bra', 'BraA09t37520Z' => 'bra', 'BraA09t37823Z' => 'bra', 'C01p19350' => 'bna', 'C02p47190' => 'bna', 'C02p57540' => 'bna', 'C03p76310' => 'bna', 'C04p27030' => 'bna', 'C05p07300' => 'bna', 'C07p29460' => 'bna', 'C07p40010' => 'bna', 'C07p53380' => 'bna', 'C08p12610' => 'bna', 'C09p23840' => 'bna', 'C09p28340' => 'bna', 'CAN.G1076.37' => 'can', 'CAN.G1076.38' => 'can', 'CAN.G222.28' => 'can', 'CAN.G370.69' => 'can', 'CAN.G567.86' => 'can', 'CAN.G702.37' => 'can', 'CAN.G792.26' => 'can', 'CAN.G90.3' => 'can', 'CANSAT21G0165' => 'cansat', 'CANSAT35G2058' => 'cansat', 'CANSAT54G1390' => 'cansat', 'CANSAT64G0790' => 'cansat', 'CARHR009290' => 'chi', 'CARHR029370' => 'chi', 'CARHR054960' => 'chi', 'CARHR175560' => 'chi', 'CARHR185570' => 'chi', 'CARHR231530' => 'chi', 'Carub.0001s0865' => 'cru', 'Carub.0001s2826' => 'cru', 'Carub.0002s0733' => 'cru', 'Carub.0007s1697' => 'cru', 'Carub.0008s0168' => 'cru', 'Carub.0008s0946' => 'cru', 'Ca_00543_v3' => 'car', 'Ca_01457_v3' => 'car', 'Ca_02366_v3' => 'car', 'Ca_09293_v3' => 'car', 'Ca_10184_v3' => 'car', 'Ca_21406_v3' => 'car', 'Ca_21421_v3' => 'car', 'Cc00_g12080' => 'ccan', 'Cc02_g14870' => 'ccan', 'Cc02_g35270' => 'ccan', 'Cc08_g16730' => 'ccan', 'Cc09_g03380' => 'ccan', 'CDE02G0707' => 'cde', 'CDE06G1749' => 'cde', 'Cfa000948' => 'cfa', 'Cfa000949' => 'cfa', 'Cfa005107' => 'cfa', 'Cfa006718' => 'cfa', 'Cfa011925' => 'cfa', 'Cfa015680' => 'cfa', 'Cfa021356' => 'cfa', 'Cfa021993' => 'cfa', 'Cfa022229' => 'cfa', 'Ciclev10002714m.g' => 'ccl', 'Ciclev10006457m.g' => 'ccl', 'Ciclev10017099m.g' => 'ccl', 'Ciclev10017452m.g' => 'ccl', 'Ciclev10017804m.g' => 'ccl', 'Ciclev10018346m.g' => 'ccl', 'Ciclev10022654m.g' => 'ccl', 'CiPaw.01G134300' => 'cil', 'CiPaw.03G187600' => 'cil', 'CiPaw.07G031300' => 'cil', 'CiPaw.08G154400' => 'cil', 'CiPaw.09G123900' => 'cil', 'CiPaw.10G092000' => 'cil', 'CiPaw.11G112500' => 'cil', 'ClCG01G001530' => 'cla', 'ClCG01G011130' => 'cla', 'ClCG01G024600' => 'cla', 'ClCG02G014780' => 'cla', 'ClCG07G006060' => 'cla', 'ClCG09G004130' => 'cla', 'COL.COLO4_05530' => 'col', 'COL.COLO4_10794' => 'col', 'COL.COLO4_31075' => 'col', 'COL.COLO4_31076' => 'col', 'COL.COLO4_31305' => 'col', 'COL.COLO4_33571' => 'col', 'COL.COLO4_34566' => 'col', 'Cpa.g.sc166.9' => 'cpa', 'Cpa.g.sc209.35' => 'cpa', 'Cpa.g.sc48.180' => 'cpa', 'Cpa.g.sc549.2' => 'cpa', 'CsaV3_1G015670' => 'csa', 'CsaV3_1G037930' => 'csa', 'CsaV3_2G007230' => 'csa', 'CsaV3_5G001680' => 'csa', 'CsaV3_5G014640' => 'csa', 'CsaV3_6G051720' => 'csa', 'CsaV3_7G031030' => 'csa', 'CSS0011264' => 'camsi', 'CSS0022498' => 'camsi', 'CSS0030627' => 'camsi', 'CSS0032068' => 'camsi', 'CSS0033800' => 'camsi', 'CSS0041309' => 'camsi', 'CSS0043556' => 'camsi', 'CSS0044725' => 'camsi', 'CSS0046668' => 'camsi', 'CSS0049395' => 'camsi', 'DCAR_001899' => 'dca', 'DCAR_001900' => 'dca', 'DCAR_002175' => 'dca', 'DCAR_004820' => 'dca', 'DCAR_005277' => 'dca', 'DCAR_005278' => 'dca', 'DCAR_006371' => 'dca', 'DCAR_021453' => 'dca', 'DCAR_027916' => 'dca', 'DCAR_027917' => 'dca', 'Dinv03823' => 'din', 'Dinv12928' => 'din', 'Dinv14866' => 'din', 'Dinv16761' => 'din', 'Dinv18354' => 'din', 'Dinv24477' => 'din', 'Dinv25261' => 'din', 'Dinv30742' => 'din', 'Dinv30909' => 'din', 'Dinv32218' => 'din', 'Dinv33985' => 'din', 'Duzib052G0542' => 'dzi', 'Duzib068G0409' => 'dzi', 'Duzib106G0770' => 'dzi', 'Duzib128G1354' => 'dzi', 'Duzib147G1034' => 'dzi', 'Duzib151G0661' => 'dzi', 'Duzib160G0223' => 'dzi', 'Duzib160G0381' => 'dzi', 'Duzib177G0035' => 'dzi', 'Duzib187G1274' => 'dzi', 'Duzib192G0630' => 'dzi', 'Duzib192G0773' => 'dzi', 'Duzib235G0582' => 'dzi', 'Duzib235G1535' => 'dzi', 'Duzib251G0923' => 'dzi', 'ECA234G2459' => 'eca', 'ECA234G4362' => 'eca', 'ECA236G0989' => 'eca', 'ECA236G1655' => 'eca', 'ECA240G2421' => 'eca', 'ECA246G4499' => 'eca', 'EL10Ac4g09497' => 'bvu', 'EL10Ac4g09767' => 'bvu', 'EL10Ac5g12430' => 'bvu', 'Eucgr.A01907' => 'egr', 'Eucgr.A01912' => 'egr', 'Eucgr.B02938' => 'egr', 'Eucgr.D00492' => 'egr', 'Eucgr.D01682' => 'egr', 'Eucgr.D02477' => 'egr', 'Eucgr.E02382' => 'egr', 'Eucgr.E02409' => 'egr', 'Eucgr.F03262' => 'egr', 'Eucgr.F03263' => 'egr', 'Eucgr.H03305' => 'egr', 'Eucgr.H04075' => 'egr', 'Eucgr.K01916' => 'egr', 'Eucgr.L03468' => 'egr', 'FAN02G1259' => 'fan', 'FAN02G1743' => 'fan', 'FAN02G3275' => 'fan', 'FAN02G3633' => 'fan', 'FAN04G1483' => 'fan', 'FAN04G2247' => 'fan', 'FAN05G1168' => 'fan', 'FAN05G2285' => 'fan', 'FAN05G2871' => 'fan', 'FAN05G2907' => 'fan', 'FAN08G0018' => 'fan', 'FAN08G1893' => 'fan', 'FAN09G1482' => 'fan', 'FAN09G2512' => 'fan', 'FAN09G4142' => 'fan', 'FAN11G0719' => 'fan', 'FAN11G0971' => 'fan', 'FAN13G2471' => 'fan', 'FAN13G3256' => 'fan', 'FAN14G3997' => 'fan', 'FAN14G4671' => 'fan', 'FAN14G5217' => 'fan', 'FAN16G0798' => 'fan', 'FAN16G0855' => 'fan', 'FAN16G1626' => 'fan', 'FAN16G2175' => 'fan', 'FAN18G1138' => 'fan', 'FAN18G2403' => 'fan', 'FAN21G3340' => 'fan', 'FAN21G3741' => 'fan', 'FAN25G0885' => 'fan', 'FAN25G2317' => 'fan', 'FvH4_3g05580' => 'fve', 'FvH4_3g05630' => 'fve', 'FvH4_3g07840' => 'fve', 'FvH4_5g10920' => 'fve', 'FvH4_5g26660' => 'fve', 'FvH4_6g07820' => 'fve', 'FvH4_6g07830' => 'fve', 'FvH4_6g24940' => 'fve', 'FvH4_6g37650' => 'fve', 'Glyma.03G230600' => 'gma', 'Glyma.07G234400' => 'gma', 'Glyma.07G236700' => 'gma', 'Glyma.10G145900' => 'gma', 'Glyma.12G210200' => 'gma', 'Glyma.13G291100' => 'gma', 'Glyma.15G094200' => 'gma', 'Glyma.15G189700' => 'gma', 'Glyma.17G036800' => 'gma', 'Glyma.17G039900' => 'gma', 'Gohir.A02G056000' => 'ghi', 'Gohir.A04G090050' => 'ghi', 'Gohir.A04G090100' => 'ghi', 'Gohir.A05G155400' => 'ghi', 'Gohir.A06G137200' => 'ghi', 'Gohir.A06G137300' => 'ghi', 'Gohir.A06G200300' => 'ghi', 'Gohir.A08G204800' => 'ghi', 'Gohir.A09G001700' => 'ghi', 'Gohir.A11G018900' => 'ghi', 'Gohir.A13G176200' => 'ghi', 'Gohir.D02G061200' => 'ghi', 'Gohir.D04G130200' => 'ghi', 'Gohir.D04G130233' => 'ghi', 'Gohir.D05G158300' => 'ghi', 'Gohir.D06G142400' => 'ghi', 'Gohir.D06G142500' => 'ghi', 'Gohir.D06G207600' => 'ghi', 'Gohir.D08G222000' => 'ghi', 'Gohir.D09G001400' => 'ghi', 'Gohir.D10G181650' => 'ghi', 'Gohir.D11G018600' => 'ghi', 'Gohir.D13G182600' => 'ghi', 'Gorai.004G235700' => 'gra', 'Gorai.005G068800' => 'gra', 'Gorai.006G001600' => 'gra', 'Gorai.007G019900' => 'gra', 'Gorai.009G163100' => 'gra', 'Gorai.010G166200' => 'gra', 'Gorai.010G166300' => 'gra', 'Gorai.010G242000' => 'gra', 'Gorai.011G203200' => 'gra', 'Gorai.012G113700' => 'gra', 'Gorai.012G113800' => 'gra', 'Gorai.012G113900' => 'gra', 'Gorai.013G130500' => 'gra', 'Gorai.013G208000' => 'gra', 'GSVIVG01019650001' => 'vvi', 'GSVIVG01020700001' => 'vvi', 'GSVIVG01021207001' => 'vvi', 'GSVIVG01021449001' => 'vvi', 'GSVIVG01031263001' => 'vvi', 'HanXRQChr03g0086141' => 'han', 'HanXRQChr04g0115941' => 'han', 'HanXRQChr05g0137911' => 'han', 'HanXRQChr05g0137931' => 'han', 'HanXRQChr06g0181691' => 'han', 'HanXRQChr10g0315301' => 'han', 'HanXRQChr10g0315311' => 'han', 'HanXRQChr12g0357021' => 'han', 'HanXRQChr13g0415561' => 'han', 'HanXRQChr13g0422671' => 'han', 'HanXRQChr15g0469321' => 'han', 'HanXRQChr15g0480641' => 'han', 'HanXRQChr15g0486521' => 'han', 'Haze_00859' => 'cav', 'Haze_04042' => 'cav', 'Haze_05591' => 'cav', 'Haze_05592' => 'cav', 'Haze_06237' => 'cav', 'Haze_09174' => 'cav', 'Haze_13356' => 'cav', 'Hma1.2p1_0008F-1.1_g005420' => 'hma', 'Hma1.2p1_0052F.1_g030680' => 'hma', 'Hma1.2p1_0090F.1_g046110' => 'hma', 'Hma1.2p1_0283F.1_g113650' => 'hma', 'Hma1.2p1_0286F.1_g113980' => 'hma', 'Hma1.2p1_0500F.1_g166910' => 'hma', 'Hma1.2p1_0987F.1_g244590' => 'hma', 'Hma1.2p1_1386F.1_g279880' => 'hma', 'Hma1.2p1_1820F.1_g304199' => 'hma', 'HPP92_002849' => 'vpl', 'HPP92_013388' => 'vpl', 'HPP92_013401' => 'vpl', 'HPP92_014394' => 'vpl', 'HPP92_023663' => 'vpl', 'HPP92_026574' => 'vpl', 'HPP92_026575' => 'vpl', 'HPP92_026576' => 'vpl', 'HPP92_026577' => 'vpl', 'HPP92_026578' => 'vpl', 'HPP92_026580' => 'vpl', 'HPP92_026581' => 'vpl', 'HPP92_026582' => 'vpl', 'HPP92_026583' => 'vpl', 'HPP92_026584' => 'vpl', 'HPP92_026585' => 'vpl', 'HPP92_026586' => 'vpl', 'HPP92_026587' => 'vpl', 'Lalb_Chr02g0147701' => 'lal', 'Lalb_Chr02g0147711' => 'lal', 'Lalb_Chr06g0167421' => 'lal', 'Lalb_Chr12g0200601' => 'lal', 'Lalb_Chr13g0298691' => 'lal', 'Lalb_Chr15g0077681' => 'lal', 'Lalb_Chr15g0089081' => 'lal', 'Lalb_Chr18g0046121' => 'lal', 'Lalb_Chr18g0055451' => 'lal', 'Lalb_Chr21g0310181' => 'lal', 'Lj1g0023667' => 'lja', 'Lj1P1193T29' => 'lonja', 'Lj1P831T46' => 'lonja', 'Lj2A298T36' => 'lonja', 'Lj2P305T38' => 'lonja', 'Lj2P306T19' => 'lonja', 'Lj4g0019455' => 'lja', 'Lj4P179T19' => 'lonja', 'Lj5A325T75' => 'lonja', 'Lj5g0013402' => 'lja', 'Lj6g0002033' => 'lja', 'Lj6g0016780' => 'lja', 'Lj6g0017082' => 'lja', 'Lj6g0021411' => 'lja', 'Lj8P200T50' => 'lonja', 'Lju926C1G0' => 'lonja', 'Lju926C1T2' => 'lonja', 'Lju926C1T3' => 'lonja', 'Lju926C2T3' => 'lonja', 'Lsat_1_v5_gn_3_14260' => 'lsa', 'Lsat_1_v5_gn_5_35720' => 'lsa', 'Lsat_1_v5_gn_5_94461' => 'lsa', 'Lsat_1_v5_gn_5_94621' => 'lsa', 'Lsat_1_v5_gn_6_82081' => 'lsa', 'Lsat_1_v5_gn_6_82141' => 'lsa', 'Lsat_1_v5_gn_6_82161' => 'lsa', 'Lsat_1_v5_gn_7_24060' => 'lsa', 'Lsat_1_v5_gn_8_116801' => 'lsa', 'Manes.01G039400' => 'mes', 'Manes.03G102300' => 'mes', 'Manes.08G109900' => 'mes', 'Manes.09G178300' => 'mes', 'Manes.15G002600' => 'mes', 'Manes.15G121300' => 'mes', 'Manes.16G038600' => 'mes', 'Manes.17G055300' => 'mes', 'Manes.17G069100' => 'mes', 'Mapoly0010s0193' => 'mpo', 'Mapoly0029s0149' => 'mpo', 'Mapoly0088s0016' => 'mpo', 'Mapoly0116s0005' => 'mpo', 'MBI06_g26005_MAGBIO' => 'mbi', 'MBI07_g03171_MAGBIO' => 'mbi', 'MBI07_g26353_MAGBIO' => 'mbi', 'MBI10_g32109_MAGBIO' => 'mbi', 'MBI10_g32110_MAGBIO' => 'mbi', 'MBI10_g43703_MAGBIO' => 'mbi', 'MBI12_g02421_MAGBIO' => 'mbi', 'MBI19_g03281_MAGBIO' => 'mbi', 'MD04G1123900' => 'mdo', 'MD04G1191700' => 'mdo', 'MD05G1284100' => 'mdo', 'MD05G1301700' => 'mdo', 'MD05G1301800' => 'mdo', 'MD06G1118500' => 'mdo', 'MD10G1262400' => 'mdo', 'MD10G1280600' => 'mdo', 'MD10G1280700' => 'mdo', 'MD13G1256800' => 'mdo', 'MD14G1126600' => 'mdo', 'Medtr1g084200' => 'mtr', 'Medtr2g019480' => 'mtr', 'Medtr2g046150' => 'mtr', 'Medtr2g091210' => 'mtr', 'Medtr2g091215' => 'mtr', 'Medtr4g122930' => 'mtr', 'Medtr7g103200' => 'mtr', 'Medtr7g111900' => 'mtr', 'MELO3C004171.2' => 'cme', 'MELO3C005784.2' => 'cme', 'MELO3C007135.2' => 'cme', 'MELO3C015251.2' => 'cme', 'MELO3C023553.2' => 'cme', 'MELO3C026103.2' => 'cme', 'MELO3C026417.2' => 'cme', 'Migut.B00938' => 'egut', 'Migut.D01266' => 'egut', 'Migut.H01363' => 'egut', 'Migut.H01426' => 'egut', 'Migut.H01989' => 'egut', 'Migut.M00738' => 'egut', 'MSTRG.14773' => 'ama', 'MSTRG.16241' => 'ama', 'MSTRG.16413' => 'ama', 'MSTRG.20370' => 'ama', 'MSTRG.27928' => 'ama', 'MSTRG.4604' => 'ama', 'MSTRG.7486' => 'ama', 'MSTRG.9328' => 'ama', 'Nitab4.5_0000420g0110' => 'nta', 'Nitab4.5_0000605g0260' => 'nta', 'Nitab4.5_0000673g0120' => 'nta', 'Nitab4.5_0000673g0150' => 'nta', 'Nitab4.5_0001962g0030' => 'nta', 'Nitab4.5_0002076g0050' => 'nta', 'Nitab4.5_0002275g0010' => 'nta', 'Nitab4.5_0003044g0130' => 'nta', 'Nitab4.5_0003838g0030' => 'nta', 'Nitab4.5_0006225g0010' => 'nta', 'Nitab4.5_0007975g0010' => 'nta', 'Nitab4.5_0009189g0010' => 'nta', 'Nitab4.5_0012940g0030' => 'nta', 'Nn1g00379' => 'nnu', 'Nn3g18806' => 'nnu', 'Nn3g20771' => 'nnu', 'Nn3g21803' => 'nnu', 'Nn3g21804' => 'nnu', 'Nn4g25512' => 'nnu', 'Nn4g25515' => 'nnu', 'Nn4g25516' => 'nnu', 'Nn4g26576' => 'nnu', 'Nn5g26740' => 'nnu', 'Nn7g36322' => 'nnu', 'Oeu000070.1' => 'oeu', 'Oeu019846.1' => 'oeu', 'Oeu022034.1' => 'oeu', 'Oeu031266.1' => 'oeu', 'Oeu042447.1' => 'oeu', 'Oeu052371.1' => 'oeu', 'Oeu059267.1' => 'oeu', 'Os01g0210600' => 'osa', 'Os01g0652700' => 'osa', 'Os05g0573600' => 'osa', 'Os06g0538900' => 'osa', 'Os07g0118200' => 'osa', 'Os07g0118250' => 'osa', 'Os07g0119800' => 'osa', 'Os07g0120000' => 'osa', 'Os07g0120100' => 'osa', 'Os07g0120300' => 'osa', 'Os07g0120500' => 'osa', 'Os07g0120650' => 'osa', 'Os11g0594700' => 'osa', 'Os11g0594800' => 'osa', 'Os11g0595000' => 'osa', 'Os11g0683600' => 'osa', 'Os12g0563600' => 'osa', 'Peaxi162Scf00067g00193' => 'pax', 'Peaxi162Scf00071g00313' => 'pax', 'Peaxi162Scf00162g00141' => 'pax', 'Peaxi162Scf00357g00077' => 'pax', 'Peaxi162Scf00443g00044' => 'pax', 'Peaxi162Scf01211g00122' => 'pax', 'PGR004G1469' => 'pgr', 'PGR004G1661' => 'pgr', 'PGR004G2505' => 'pgr', 'PGR031G0722' => 'pgr', 'PGR031G3875' => 'pgr', 'PGR042G0814' => 'pgr', 'PGR042G2765' => 'pgr', 'PGR042G3474' => 'pgr', 'PGR083G1291' => 'pgr', 'PGSC0003DMG400002790' => 'stu', 'PGSC0003DMG400002791' => 'stu', 'PGSC0003DMG400005864' => 'stu', 'PGSC0003DMG400005865' => 'stu', 'PGSC0003DMG400009652' => 'stu', 'PGSC0003DMG400010201' => 'stu', 'PGSC0003DMG400010202' => 'stu', 'PGSC0003DMG400010203' => 'stu', 'PGSC0003DMG400010204' => 'stu', 'PGSC0003DMG400010205' => 'stu', 'PGSC0003DMG400012241' => 'stu', 'PGSC0003DMG400021164' => 'stu', 'PGSC0003DMG400039642' => 'stu', 'PGSC0003DMG402004382' => 'stu', 'Phvul.001G224400' => 'pvu', 'Phvul.003G117900' => 'pvu', 'Phvul.003G120900' => 'pvu', 'Phvul.005G095700' => 'pvu', 'Phvul.006G164700' => 'pvu', 'Phvul.007G202800' => 'pvu', 'Potri.001G084200' => 'ptr', 'Potri.003G146400' => 'ptr', 'Potri.004G056700' => 'ptr', 'Potri.004G064700' => 'ptr', 'Potri.004G084600' => 'ptr', 'Potri.005G011200' => 'ptr', 'Potri.010G149100' => 'ptr', 'Potri.013G007000' => 'ptr', 'Potri.017G133300' => 'ptr', 'Pp3c10_4780' => 'ppa', 'Pp3c14_5730' => 'ppa', 'Pp3c17_12850' => 'ppa', 'Pp3c1_32930' => 'ppa', 'Pp3c2_18440' => 'ppa', 'Prupe.3G121500' => 'ppe', 'Prupe.4G060600' => 'ppe', 'Prupe.4G060700' => 'ppe', 'Prupe.4G080300' => 'ppe', 'Prupe.5G129600' => 'ppe', 'Prupe.6G310300' => 'ppe', 'Psat0s1510g0040' => 'psa', 'Psat0s1858g0080' => 'psa', 'Psat0s1953g0560' => 'psa', 'Psat0s2223g0120' => 'psa', 'Psat0s2223g0160' => 'psa', 'Psat0s2737g0040' => 'psa', 'Psat1g017880' => 'psa', 'Psat1g190640' => 'psa', 'Psat1g198280' => 'psa', 'Psat3g014120' => 'psa', 'Psat6g154240' => 'psa', 'PSO017G6132' => 'pso', 'PSO170G5810' => 'pso', 'PSO210G5066' => 'pso', 'PSO210G5993' => 'pso', 'PSO339G2168' => 'pso', 'PSO407G0262' => 'pso', 'PSO407G0267' => 'pso', 'PSO541G4067' => 'pso', 'PSO675G1168' => 'pso', 'PSO675G5649' => 'pso', 'PSO761G0225' => 'pso', 'PSO761G0713' => 'pso', 'PSO801G0635' => 'pso', 'QL02p028170' => 'qlo', 'QL03p016230' => 'qlo', 'QL03p016233' => 'qlo', 'QL03p016503' => 'qlo', 'QL03p016506' => 'qlo', 'QL05p058278' => 'qlo', 'QL06p013119' => 'qlo', 'QL08p041548' => 'qlo', 'RcHm_v2.0_Chr1g0371381' => 'rch', 'RcHm_v2.0_Chr2g0129271' => 'rch', 'RcHm_v2.0_Chr3g0457531' => 'rch', 'RcHm_v2.0_Chr5g0010731' => 'rch', 'RcHm_v2.0_Chr5g0014081' => 'rch', 'RcHm_v2.0_Chr7g0186901' => 'rch', 'Rhsim02G0162500' => 'rsi', 'Rhsim04G0242600' => 'rsi', 'Rhsim05G0129000' => 'rsi', 'Rhsim07G0078100' => 'rsi', 'Rhsim11G0097800' => 'rsi', 'RhsimUnG0055300' => 'rsi', 'Sabra01G0061100' => 'sbr', 'Sabra03G0106600' => 'sbr', 'Sabra04G0043000' => 'sbr', 'Sabra05G0008300' => 'sbr', 'Sabra05G0019600' => 'sbr', 'Sabra13G0005900' => 'sbr', 'SalBow1G4722' => 'sbo', 'SalBow1G8652' => 'sbo', 'SalBow7G0328' => 'sbo', 'SalBow7G0472' => 'sbo', 'SalBow7G0770' => 'sbo', 'SalBow8G0770' => 'sbo', 'SalBow8G1288' => 'sbo', 'SalBow8G3882' => 'sbo', 'SalBow8G4525' => 'sbo', 'SalBow8G4716' => 'sbo', 'Sc01g0010670' => 'sci', 'Sc05g0006210' => 'sci', 'Sc06g0005720' => 'sci', 'Sc09g0002600' => 'sci', 'Sc17g0004920' => 'sci', 'Sed0001773' => 'sed', 'Sed0008317' => 'sed', 'Sed0010719' => 'sed', 'Sed0013953' => 'sed', 'Sed0016622' => 'sed', 'Sed0025585' => 'sed', 'Sed0026814' => 'sed', 'SEGI_12273' => 'sgi', 'SEGI_12731' => 'sgi', 'SEGI_21896' => 'sgi', 'SEGI_28433' => 'sgi', 'SEGI_28900' => 'sgi', 'SEGI_30491' => 'sgi', 'SEGI_32876' => 'sgi', 'SGA_v2.0_scaffold106G30648' => 'sas', 'SGA_v2.0_scaffold1G00172' => 'sas', 'SGA_v2.0_scaffold37G14588' => 'sas', 'SGA_v2.0_scaffold446G51742' => 'sas', 'SGA_v2.0_scaffold5G02867' => 'sas', 'SHI18047' => 'shi', 'SMO348G0007' => 'smo', 'SMO351G0146' => 'smo', 'Solyc01g100750.2' => 'sly', 'Solyc01g100760.2' => 'sly', 'Solyc01g100770.2' => 'sly', 'Solyc02g076890.1' => 'sly', 'Solyc08g016580.1' => 'sly', 'Sopen00g008360' => 'spe', 'Sopen01g044250' => 'spe', 'Sopen01g044260' => 'spe', 'Sopen01g044270' => 'spe', 'Sopen02g019590' => 'spe', 'Sopen02g021800' => 'spe', 'Sopen02g021810' => 'spe', 'Sopen02g021820' => 'spe', 'Sopen03g002190' => 'spe', 'Sopen08g006950' => 'spe', 'Sopen08g031310' => 'spe', 'Sp1g07920' => 'spa', 'Sp1g25900' => 'spa', 'Sp2g06160' => 'spa', 'Sp2g11090' => 'spa', 'Sp2g11100' => 'spa', 'Sp2g19910' => 'spa', 'Sp7g22090' => 'spa', 'TAR362G0686' => 'tar', 'TAR375G1099' => 'tar', 'TAR624G0093' => 'tar', 'TAR626G1531' => 'tar', 'TAR627G1120' => 'tar', 'TAR629G0520' => 'tar', 'TAR629G2262' => 'tar', 'TAR633G0027' => 'tar', 'TAR636G2005' => 'tar', 'THA.LOC104806126' => 'tha', 'THA.LOC104813059' => 'tha', 'THA.LOC104815231' => 'tha', 'THA.LOC104816860' => 'tha', 'THA.LOC104818870' => 'tha', 'THA.LOC104820575' => 'tha', 'THA.LOC104820708' => 'tha', 'THA.LOC104820744' => 'tha', 'THA.LOC104823717' => 'tha', 'THA.LOC104827471' => 'tha', 'Thecc.01G149800' => 'tca', 'Thecc.03G221300' => 'tca', 'Thecc.04G306300' => 'tca', 'Thecc.05G325300' => 'tca', 'Thecc.06G151000' => 'tca', 'Thecc.06G151100' => 'tca', 'Thecc.06G171400' => 'tca', 'Thhalv10001064m.g' => 'esa', 'Thhalv10001128m.g' => 'esa', 'Thhalv10005030m.g' => 'esa', 'Thhalv10008903m.g' => 'esa', 'Thhalv10009038m.g' => 'esa', 'Thhalv10023729m.g' => 'esa', 'Thhalv10026459m.g' => 'esa', 'TPR.G11505' => 'tpr', 'TPR.G1621' => 'tpr', 'TPR.G1646' => 'tpr', 'TPR.G1665' => 'tpr', 'TPR.G22200' => 'tpr', 'TPR.G25395' => 'tpr', 'TPR.G2634' => 'tpr', 'TPR.G26668' => 'tpr', 'TWI09G0372' => 'twi', 'TWI14G0219' => 'twi', 'TWI15G0877' => 'twi', 'TWI36G1535' => 'twi', 'TWI53G0617' => 'twi', 'TWI56G0684' => 'twi', 'TWI60G1300' => 'twi', 'unitig_0.g1247' => 'ugi', 'unitig_37.g12613' => 'ugi', 'unitig_37.g12616' => 'ugi', 'unitig_42.g32304' => 'ugi', 'unitig_46.g18362' => 'ugi', 'unitig_52.g17273' => 'ugi', 'unitig_699.g19664' => 'ugi', 'unitig_899.g14749' => 'ugi', 'vmacro07969' => 'vma', 'vmacro11501' => 'vma', 'vmacro11502' => 'vma', 'vmacro19780' => 'vma', 'VMungo0540G0302' => 'vmu', 'VMungo0720G1737' => 'vmu', 'VMungo1080G1487' => 'vmu', 'VMungo1215G1262' => 'vmu', 'VMungo1383G1610' => 'vmu', 'Zm00001eb028590' => 'zma', 'Zm00001eb043450' => 'zma', 'Zm00001eb067840' => 'zma', 'Zm00001eb067850' => 'zma', 'Zm00001eb067860' => 'zma', 'Zm00001eb067870' => 'zma', 'Zm00001eb067880' => 'zma', 'Zm00001eb136750' => 'zma', 'Zm00001eb158180' => 'zma', 'Zm00001eb165030' => 'zma', 'Zm00001eb198880' => 'zma', 'Zm00001eb277840' => 'zma', 'Zm00001eb296500' => 'zma', 'Zm00001eb298810' => 'zma', 'Zm00001eb298820' => 'zma', 'Zm00001eb338360' => 'zma' ) $gf_id = 'HOM05D000692' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000692' ) $data_identifier = 'HOM05D000692' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 6, 'arhy' => (int) 3, 'ath' => (int) 6, 'atr' => (int) 6, 'acertr' => (int) 9, 'cqu' => (int) 7, 'bca' => (int) 26, 'bol' => (int) 11, 'bra' => (int) 14, 'can' => (int) 8, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 2, 'cfa' => (int) 9, 'ccl' => (int) 7, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 15, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 14, 'fan' => (int) 32, 'fve' => (int) 9, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 14, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 7, 'hma' => (int) 9, 'vpl' => (int) 18, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 12, 'lsa' => (int) 9, 'mes' => (int) 9, 'mpo' => (int) 4, 'mbi' => (int) 8, 'mdo' => (int) 11, 'mtr' => (int) 8, 'cme' => (int) 7, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 17, 'pax' => (int) 6, 'pgr' => (int) 9, 'stu' => (int) 14, 'pvu' => (int) 6, 'ptr' => (int) 9, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 13, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 10, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 7, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 2, 'sly' => (int) 5, 'spe' => (int) 11, 'spa' => (int) 7, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 7, 'esa' => (int) 7, 'tpr' => (int) 8, 'twi' => (int) 7, 'ugi' => (int) 8, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb338360' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1